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WCS Transformations


If you are already familiar with PyWCS, astropy.wcs is in fact the same code as the latest version of PyWCS, and you can adapt old scripts that use PyWCS to use Astropy by simply doing:

from astropy import wcs as pywcs

However, for new scripts, we recommend the following import:

from astropy.wcs import WCS

since most of the user-level functionality is contained within the WCS class.


For more information about the features presented below, you can read the astropy.wcs docs.

Before you proceed

If you have not already done so, download this file and then expand it and go into this directory:

tar xvzf astropy4mpik.tar.gz
cd astropy4mpik

Then start up IPython with the --pylab option to enable easy plotting:

ipython --pylab


The data used in this page (ROSAT.fits) is a map of the Soft X-ray Diffuse Background from the ROSAT XRT/PSPC in the 3/4 keV band, in an Aitoff projection:


Representing WCS transformations

The World Coordinate System standard is often used in FITS files in order to describe the conversion from pixel to world (e.g. equatorial, galactic, etc.) coordinates. Given a FITS file with WCS information, such as ROSAT.fits, we can create an object to represent the WCS transformation either by directly supplying the filename:

>>> from astropy.wcs import WCS
>>> w = WCS('ROSAT.fits')

or the header of the FITS file:

>>> from import fits
>>> from astropy.wcs import WCS
>>> header = fits.getheader('ROSAT.fits')
>>> w = WCS(header)

Pixel to World and World to Pixel transformations

Once the WCS object has been created, you can use the following methods to convert pixel to world coordinates:

>>> wx, wy = w.wcs_pix2world(250., 100., 1)
>>> print wx, wy
352.67460912268814 -15.413728717834152

This converts the pixel coordinates (250, 100) to the native world coordinate system of the transformation. Note the third argument, set to 1, which indicates whether the pixel coordinates should be treated as starting from (1, 1) (as FITS files do) or from (0, 0). Converting from world to pixel coordinates is similar:

>>> px, py = w.wcs_world2pix(0., 0., 1)
>>> print px, py
240.5 120.5

Working with arrays

If many coordinates need to be transformed, then it is possible to use Numpy arrays:

>>> import numpy as np
>>> px = np.linspace(200., 300., 10)
>>> py = np.repeat(100., 10)
>>> wx, wy = w.wcs_pix2world(px, py, 1)
>>> print wx
[  31.31117136   22.6911179    14.09965438    5.52581152  356.9588445
  348.38809541  339.80285857  331.19224432  322.54503641  313.84953796]
>>> print wy
[-15.27956026 -15.34691039 -15.39269292 -15.4170814  -15.42016742
 -15.40196251 -15.36239844 -15.30132572 -15.21851046 -15.11362923]

Practical Exercises

Level 1

Try converting more values from pixel to world coordinates, and try converting these back to pixel coordinates. Do the results agree with the original pixel coordinates? Also, what are the world coordinates of the pixel at (1, 1), and why?

Click to Show/Hide Solution

The final pixel coordinates should always agree with the starting ones, since each pixel covers a unique world coordinate position. The world coordinates of the pixel at (1, 1) are not defined:

w.wcs_pix2world(1, 1, 1)
[array(nan), array(nan)]

because the pixel lies outside the coordinate grid. Thus, not all pixels in an image have a valid position on the sky.

Level 2

Extract and print out the values in the ROSAT map at the position of the LAT Point Sources (from the FITS tutorial)

Click to Show/Hide Solution

import numpy as np
from import fits
from astropy.wcs import WCS

# Read in LAT Point Source Catalog
hdulist_cat ='')
psc = hdulist_cat[1].data

# Extract Galactic Coordinates
l = hdulist_cat[1].data['GLON']
b = hdulist_cat[1].data['GLAT']

# Read in ROSAT map
hdulist_im ='ROSAT.fits')

# Extract image and header
image = hdulist_im[0].data
header = hdulist_im[0].header

# Instantiate WCS object
w = WCS(header)

# Find pixel positions of LAT sources. Note we use ``0`` here for the last
# argument, since we want zero based indices (for Numpy), not the FITS
# pixel positions.
px, py = w.wcs_world2pix(l, b, 0)

# Find the nearest integer pixel
px = np.round(px).astype(int)
py = np.round(py).astype(int)

# Find the ROSAT values (note the reversed index order)
values = image[py, px]

# Print out the values
print values

which gives:

[ 123.7635498   163.27642822  221.76609802 ...,  255.07995605  100.35219574

Level 3

Make a Matplotlib plot of the image showing gridlines for longitude and latitude overlaid (e.g. every 30 degrees).

Click to Show/Hide Solution

import numpy as np
from matplotlib import pyplot as plt
from import fits
from astropy.wcs import WCS

# Read in file
hdulist ='ROSAT.fits')

# Extract image and header
image = hdulist[0].data
header = hdulist[0].header

# Instantiate WCS object
w = WCS(header)

# Plot the image
fig = plt.figure()
ax = fig.add_subplot(1, 1, 1)
          origin='lower', vmin=0, vmax=1000.)

# Loop over lines of longitude
for lon in np.linspace(-180., 180., 13):
    grid_lon = np.repeat(lon, 100)
    grid_lat = np.linspace(-90., 90., 100)
    px, py = w.wcs_world2pix(grid_lon, grid_lat, 1)
    ax.plot(px, py, color='white', alpha=0.5)

# Loop over lines of latitude
for lat in np.linspace(-60., 60., 5):
    grid_lon = np.linspace(-180., 180., 100)
    grid_lat = np.repeat(lat, 100)
    px, py = w.wcs_world2pix(grid_lon, grid_lat, 1)
    ax.plot(px, py, color='white', alpha=0.5)

ax.set_xlim(0, image.shape[1])
ax.set_ylim(0, image.shape[0])
fig.savefig('wcs_extra.png', bbox_inches='tight')
Copyright: Smithsonian Astrophysical Observatory under terms of CC Attribution 3.0 Creative Commons